Get started
New to nf-core? Start here to learn the basics and run your first pipeline.
What is nf-core?
Environment setup
Overview
Set up your environment
Nextflow
Install Nextflow
Software dependencies
Manage software dependencies
nf-core tools
Install nf-core/tools
VS Code
Install VS Code and extensions
Dev Containers
Use and create Dev Containers
Prettier
Maintain consistent code style
Troubleshooting
Troubleshoot common issues